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Yvan Saeys

TinGa: fast and flexible trajectory inference with Growing Neural Gas
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Flexible inference of both within-lineage and between-lineage differential expression.
dyngen: a multi-modal simulator for spearheading new single-cell omics analyses
The RNA Atlas, a single nucleotide resolution map of the human transcriptome
Essential guidelines for computational method benchmarking
Trajectory-based differential expression analysis for single-cell sequencing data
A comparison of single-cell trajectory inference methods
Network Inference from Single-Cell Transcriptomic Data
The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages
IncGraph: Incremental graphlet counting for topology optimisation
A comprehensive evaluation of module detection methods for gene expression data
A comparison of single-cell trajectory inference methods: towards more accurate and robust tools
SCORPIUS improves trajectory inference and identifies novel modules in dendritic cell development
Computational methods for trajectory inference from single-cell transcriptomics